This notebook coordinates the execution of the realtime-kinetics analysis of single-spot μs-ALEX measurements of RNAP open-complex to run-off (bubbble-bubble labeling). A single template notebook is executed many times, one for each measurement.
The module nbrun.py
needs to be in the current folder:
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from nbrun import run_notebook
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nb_name = '1-spot bubble-bubble kinetics - Template'
out_path = 'out_notebooks'
windows = (30, 180)
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for meas_id in (0, 1, 2):
nb_kwargs = {'measurement_id': meas_id, 'windows': windows}
run_notebook(nb_name, nb_suffix='-out_%d' % meas_id, out_path=out_path,
nb_kwargs=nb_kwargs)
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